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Series GSE52870 Query DataSets for GSE52870
Status Public on Jun 18, 2014
Title Pax5 restoration in a mouse model of B progenitor acute lymphoblastic leukemia
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hypomorphic mutations of PAX5 occur in one third of B-progenitor acute lymphoblastic leukemias (B-ALLs), however their functional consequences remain undefined. Here we employ advanced transgenic RNAi in mice to suppress endogenous Pax5 expression in the hematopoietic compartment in vivo, which co-operates with activated STAT5 to induce B-ALL. In this model, restoring endogenous Pax5 expression in established B-ALL induces transcriptional and immunophenotypic changes reminiscent of normal B cell differentiation, disabling leukemia-initiating capacity and ultimately causing leukemia clearance.
 
Overall design Comparison of leukemias harvested from triplicate untreated mice versus triplicate Dox-treated (3 days) mice
 
Contributor(s) Liu G, Hu Y, Smyth GK, Dickins R
Citation(s) 24939936, 25605792
Submission date Dec 02, 2013
Last update date May 15, 2019
Contact name Gordon K Smyth
E-mail(s) smyth@wehi.edu.au
Phone (+61 3) 9345 2326
Fax (+61 3) 9347 0852
URL http://www.wehi.edu.au
Organization name Walter and Eliza Hall Institute of Medical Research
Department Bioinformatics
Lab Smyth
Street address 1G Royal Pde
City Parkville
State/province Vic
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM1277329 RNA-seq untreated 1
GSM1277330 RNA-seq untreated 2
GSM1277331 RNA-seq untreated 3
Relations
BioProject PRJNA230380
SRA SRP033416

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52870_Pax5Restoration-GenewiseCounts.txt.gz 280.7 Kb (ftp)(http) TXT
GSE52870_RAW.tar 890.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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