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| Status |
Public on Dec 24, 2013 |
| Title |
Global Bidirectional Transcription of the Epstein-Barr Virus Genome During Reactivation |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Using strand specific RNA-seq to assess the EBV transcriptome during reactivation of Akata cells, we found extensive bidirectional transcription extending across nearly the entire genome.
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| Overall design |
Illumina strand-specific RNA-seq of BCR-activated Akata cells at 9 time points
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| Contributor(s) |
O'Grady T, Cao S, Strong MJ, Concha M, Wang X, BonDurant SS, Adams M, Baddoo M, Srivastav SK, Lin Z, Fewell C, Yin Q, Flemington EK |
| Citation(s) |
24257595, 30080890 |
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| Submission date |
Nov 19, 2013 |
| Last update date |
Jan 15, 2020 |
| Contact name |
Erik K Flemington |
| E-mail(s) |
eflemin@tulane.edu
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| Phone |
504 988-1167
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| Organization name |
Tulane Health Sciences Center
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| Department |
Pathology
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| Street address |
1430 Tulane Ave., SL79
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| City |
New Orleans |
| State/province |
LA |
| ZIP/Postal code |
70112 |
| Country |
USA |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (13)
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| Relations |
| BioProject |
PRJNA229100 |
| SRA |
SRP033117 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE52490_RAW.tar |
6.4 Mb |
(http)(custom) |
TAR (of WIG) |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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