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| Status |
Public on Oct 01, 2015 |
| Title |
Analysis of global gene expression signatures in sweet potato as affected by temperature stress |
| Platform organism |
Ipomoea batatas |
| Sample organisms |
Ipomoea batatas; Ipomoea carnea |
| Experiment type |
Expression profiling by array
|
| Summary |
Global gene expression signatures was analysed through microarray expression profiling as a discovery platform to identify up and down regulated ESTs that represent genes involved in metabolic pathways in the leaf, fibrous root and storage root (tuber forming root) of sweetpotato (Ipomoea batatas) as affcted by high temperature stress (40oC) compared to ambient temperature (30oC). Also Global gene expression signatures was analysed by the same procedure to explore up and down regulated ESTs in tuberous root of sweet potato in comparison with fibrous root of Ipomoea cornea and identify unique ESTs that represent genes involved in tuber formation in sweet potato.
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| Overall design |
Organism : Ipomoea batatas Custom Ipomoea batatas 8x60k Gene Expression Microarray (AMADID:044020) designed by Genotypic Technology Private Limited.
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| Contributor(s) |
Ravi V, Chakrabarti S, Makeshkumar T, Saravanan R, Sreekumar J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 29, 2013 |
| Last update date |
Oct 01, 2015 |
| Contact name |
Genotypic technology |
| E-mail(s) |
sudha.rao@genotypic.co.in
|
| Organization name |
Genotypic Technology
|
| Street address |
259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE
|
| City |
Bangalore |
| State/province |
Karnataka |
| ZIP/Postal code |
560094 |
| Country |
India |
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| Platforms (1) |
| GPL17857 |
Custom Ipomoea batatas 8x60k Gene Expression Microarray (AMADID:044020) |
|
| Samples (7)
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| GSM1254218 |
Global gene expression signatures in sweet potato leaf grown at at ambient temperature |
| GSM1254219 |
Global gene expression signatures in high temperature stressed sweet potato leaf |
| GSM1254220 |
Global gene expression signatures in sweet potato fibrous root grown at ambient temperature |
| GSM1254221 |
Global gene expression signatures in high temperature stressed sweet potato fibrous root |
| GSM1254222 |
Global gene expression signatures in sweet potato tuberous root grown at ambient temperature |
| GSM1254223 |
Global gene expression signatures in high temperature stressed sweet potato tuberous root as |
| GSM1254224 |
Global gene expression signatures in fibrous root of I. carnea grown at ambient temperature |
|
| Relations |
| BioProject |
PRJNA225617 |
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