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Series GSE51812 Query DataSets for GSE51812
Status Public on Dec 16, 2013
Title Identification of chondrocyte subsets during human development
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Joint injury and osteoarthritis affect millions of people worldwide, but attempts to generate articular cartilage using adult stem/progenitor cells have been unsuccessful. We hypothesized that recapitulation of the human developmental chondrogenic program using pluripotent stem cells (PSCs) may represent a superior approach for cartilage restoration. Using laser capture microdissection followed by microarray analysis, we first defined a surface phenotype (CD146low/negCD166low/negCD73+CD44lowBMPR1B+) distinguishing the earliest cartilage committed cells (pre-chondrocytes) at 5-6 weeks of development; pellet assays confirmed these cells as functional, chondrocyte-restricted progenitors. Flow cytometry, qPCR and immunohistochemistry at 17 weeks revealed that the superficial layer of peri-articular chondrocytes was enriched in cells with this surface phenotype. Isolation of cells with a similar immunophenotype from differentiating human PSCs revealed a population of CD166negBMPR1B+ putative pre-chondrocytes. Functional characterization confirmed these cells as cartilage-committed, chondrocyte progenitors. The identification of a specific molecular signature for primary cartilagecommitted progenitors may provide essential knowledge for the generation of purified, clinically relevant cartilage cells from PSCs.
 
Overall design A total of 15 samples were analyzed. In the first comparison, there were 6 biological replicates for both the chondrogenic condensations and total limb cells. In the second comparison, three biological replicates of chondrocytes from the articular region were compared to the 6 replicates of the condensations.
 
Contributor(s) Evseenko D
Citation(s) 24371811
Submission date Oct 28, 2013
Last update date Mar 25, 2019
Contact name Denis Evseenko
E-mail(s) evseenko@usc.edu
Phone 323-219-0234
Organization name University of Southern California
Department Orthopaedic Surgery
Lab Evseenko Lab
Street address 1450 Biggy St
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (15)
GSM1253156 Chondrocyte_condensation_6wks_LCM_rep1
GSM1253157 Chondrocyte_condensation_6wks_LCM_rep2
GSM1253158 Chondrocyte_condensation_6wks_LCM_rep3
Relations
BioProject PRJNA225482

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51812_RAW.tar 71.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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