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Series GSE50835 Query DataSets for GSE50835
Status Public on Mar 05, 2014
Title DNA methylation analysis of PBMC from HIV and HIV/TB co-infected patients
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of PBMC from South African patients either infected with HIV only or coinfected with HIV and tuberculosis (TB). The Illumina Infinium 27k Human DNA methylation Beadchip was used to obtain DNA methylation profiles from PBMC samples. Samples included 19 HIV patients and 20 HIV/TB co-infected patients.
 
Overall design Bisulphite converted DNA were hybridised to the Illumina Infinium 27k Human Methylation Beadchip v1.2
 
Contributor(s) Dawany N, Showe LC, Kossenkov AV, Chang C, Ive P, Conradie F, Stevens W, Sanne I, Azzoni L, Montaner LJ
Citation(s) 24587128
Submission date Sep 12, 2013
Last update date Jan 02, 2015
Contact name Louise C Showe
E-mail(s) lshowe@wistar.org
Phone 215-898-3791
Organization name The Wistar Institute
Lab Dr. Louise Showe
Street address 3601 Spruce St
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)
Samples (40)
GSM1230946 genomic DNA from HIV infected patient 1
GSM1230947 genomic DNA from HIV infected patient 2_1
GSM1230948 genomic DNA from HIV infected patient 2_2
Relations
BioProject PRJNA219129

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50835_RAW.tar 5.8 Mb (http)(custom) TAR
GSE50835_methylated_unmethylated.txt.gz 5.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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