|
| Status |
Public on Jul 30, 2014 |
| Title |
Fine-tuning of the anaerobic response in plants relies on trihelix protein repression of the oxygen sensing machinery |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
This study analyzes transcriptomic data of Arabidopsis thaliana Col-0 and overexpression lines of Hypoxia Response Attenuator (HRA1; At3g10040) with Col-0 background (OE-HRA1). Two independent transgenic lines of OE-HRA1 were considered as biological replicates (OE-HRA1#1 and OE-HRA1#2). Seven-day-old seedlings were treated either with or without hypoxia (low oxygen) stress for 2 hours. This dataset includes CEL files, RMA signal values and MAS5 P/M/A calls from total mRNA populations. Quantitative profiling of cellular mRNAs was accomplished with the Affymetrix ATH1 platform.
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| |
|
| Overall design |
8 samples, 2 genotypes (Col-0 and OE-HRA1), 2 conditions (2 h non-stress and 2 h hypoxia stress), 2 independent biological replicate experiments
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| |
|
| Contributor(s) |
Lee S, Bailey-Serres J |
| Citation(s) |
25226037 |
| |
| Submission date |
Sep 06, 2013 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Seung Cho Lee |
| E-mail(s) |
slee064@ucr.edu
|
| Organization name |
University of California Riverside
|
| Department |
Botany & Plant Sciences
|
| Lab |
Julia Bailey-Serres
|
| Street address |
2150 Batchelor Hall
|
| City |
Riverside |
| State/province |
CA |
| ZIP/Postal code |
92521 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA218464 |
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