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Series GSE49107 Query DataSets for GSE49107
Status Public on Jan 30, 2014
Title Oxidative stress induces mitochondrial dysfunction and a protective unfolded protein response in RPE cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary How retinal pigmented epithelial (RPE) cells degenerate from oxidative stress in age-related macular degeneration (AMD) is incompletely understood. The study's intent was to identify key cytoprotective pathways activated by oxidative stress, and to determine the extent of their protection. Immunohistochemistry was used to identify the unfolded protein response (UPR) and mitochondria in the RPE of AMD samples. Maculas with early AMD had prominent IRE1α, but minimal mitochondrial TOM20 immunolabeling in mildly degenerated RPE. RPE cells treated with cigarette smoke extract (CSE), by microarray analysis, had over-represented genes involved in the antioxidant and unfolded protein response, and mitochondrial location. CSE induced the UPR sensors IRE1α, p-PERK, and ATP6, which activated CHOP. CHOP knockdown compromised cell viability after CSE exposure. At the same CSE doses, mitochondria generated superoxide anion and produced less ATP. In mice given intravitreal CSE, the RPE had increased IRE1α and decreased ATP, which elicited RPE epithelial-mesenchymal transition, as suggested by altered ZO1 immunolabeling of RPE flatmounts. Our experiments indicate that RPE cells exposed to oxidative stress respond with a cytoprotective antioxidant and unfolded protein response, but develop mitochondrial impairment that contributed to epithelial mesenchymal transition. With similar responses in the RPE of early AMD samples, these results suggest that mitochondria are vulnerable to oxidative stress while the ER elicits a protective response during early AMD.
 
Overall design A total of 9 samples were analyzed: 3 control samples, 3 samples treated with 100ug/ml of Cigarette Smoke Condensate, and 3 samples treated with 250ug/ml of Cigarettes Smoke Condensate.
 
Contributor(s) Wang L, Barnett B, Ebrahimi K, Wan J, Qian J, Handa JT
Citation(s) 24434119
Submission date Jul 22, 2013
Last update date Feb 18, 2019
Contact name Marisol D Cano
E-mail(s) mcano1@jhmi.edu
Phone 410 502 2939
Organization name Johns Hopkins University
Department Ophthalmology
Street address 400 N Broadway
City Baltimore
State/province Maryland
ZIP/Postal code 21287
Country USA
 
Platforms (1)
GPL5175 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Samples (9)
GSM1193884 RPE cells treated with vehicle control, rep1
GSM1193885 RPE cells treated with vehicle control, rep2
GSM1193886 RPE cells treated with vehicle control, rep3
Relations
BioProject PRJNA213007

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49107_RAW.tar 195.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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