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Series GSE48968 Query DataSets for GSE48968
Status Public on Jun 11, 2014
Title Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Here, we use a microfluidics-based approach to prepare single-cell RNA-Seq libraries from over 1,700 primary mouse dendritic cells (DCs) stimulated with three pathogenic components and examine variation between individual cells exposed to the same stimulus and general strategies that multicellular populations use to establish complex dynamic responses.
Overall design RNA seq libraries from 1775 single cells and population controls with SMARTer
Contributor(s) Satija R
Citation(s) 24919153
Submission date Jul 17, 2013
Last update date May 15, 2019
Contact name Rahul Satija
Phone 6177022468
Organization name New York Genome Center
Lab Satija Lab
Street address 101 Avenue of the Americas
City New York City
State/province NY
ZIP/Postal code 10013
Country USA
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (2425)
GSM1189042 On_Chip_Stimulation_LPS_4h_S1
GSM1189043 On_Chip_Stimulation_LPS_4h_S2
GSM1189044 On_Chip_Stimulation_LPS_4h_S3
BioProject PRJNA212439
SRA SRP027537

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48968_allgenesTPM_GSM1189042_GSM1190902.txt.gz 66.1 Mb (ftp)(http) TXT
GSE48968_allgenesTPM_GSM1406531_GSM1407094.txt.gz 17.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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