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Series GSE48267 Query DataSets for GSE48267
Status Public on Jun 25, 2015
Title Differential Expression of miRNAs: Implication in Colon Cancer Racial Health Disparity
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary We have demonstrated that the miR-182 level, in addition to being significantly increased in colon cancer compared to adjacent normal colon tissue, is also significantly increased in African American(AA) compared to Caucasian American (CA) colon cancer. Since miR-182 has been previously associated with decreased survival in colon cancer patients and with increased liver metastases, this observation supports the concept that biological differences between AA and CA colon cancers may contribute to AA disparities in colon cancer survival.
 
Overall design We aimed to identify miRNAs that were associated with effects of both tumor and race by generating Agilent miRNA expression profiles on paired colon cancer and adjacent normal colon collected from AA and CA colon cancer subjects. For the 30 paired Stony Brook University (SBU) colon cancer and adjacent normal colon samples, attempts were made to control for other covariates such as age, colon cancer location, stage, BMI and smoking in the selection of the CA samples . However no attempt was made to control for the other covariates in the 30 paired Washington University (WU) colon cancer and adjacent normal colon samples.
 
Contributor(s) Li E, Williams J
Citation(s) 24865442
Submission date Jun 25, 2013
Last update date Sep 28, 2015
Contact name Yuanhao Zhang
E-mail(s) yuanhao.zhang@stonybrook.edu
Organization name Stony Brook University
Department Applied Mathematics and Statistics
Street address AMS Department,Stony Brook University
City Stony Brook
ZIP/Postal code 11790
Country USA
 
Platforms (1)
GPL10850 Agilent-021827 Human miRNA Microarray (V3) (miRBase release 12.0 miRNA ID version)
Samples (122)
GSM1173638 parafilm embedded tissue_tumor_patient1
GSM1173639 parafilm embedded tissue_normal adjacent_patient1
GSM1173640 parafilm embedded tissue_tumor_patient2
Relations
BioProject PRJNA209463

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48267_RAW.tar 104.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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