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| Status |
Public on Nov 12, 2013 |
| Title |
Xenopus laevis embryos and animal caps: Control vs PouV morpholino |
| Organism |
Xenopus laevis |
| Experiment type |
Expression profiling by array
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| Summary |
Transcriptional profiling of Xenopus laevis embryos and ectoderm (animal caps) comparing embryos injected with control morpholino with embryos injected with the morpholino mixture PVD2, which knocks down all three Xenopus PouV proteins. Whole embryos (WE) or animal caps (AC) were collected at late blastula (9) or early gastrula (10) stages from Control and PVD2 morphants.
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| Overall design |
Two conditions: Control vs. PouV morpholino; Two tissues: whole embryos, animal caps .Two timepoints: stage 9 and 10. Biological replicates: 2 control replicates at stage 9 and 10 for whole embryos, 2 control replicates at stage 9 and 10 for animal caps, 2 PVD2 morpholino replicates at stage 9 and 10 for whole embryos, 2 control replicates at stage 9 and 10 for animal caps
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| Contributor(s) |
Livigni A, Sharov A |
| Citation(s) |
24210613 |
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| Submission date |
May 31, 2013 |
| Last update date |
Nov 12, 2013 |
| Contact name |
Joshua Brickman |
| E-mail(s) |
Joshua.Brickman@sund.ku.dk
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| Organization name |
University of Copenhagen
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| Department |
The Danish Stem Cell Centre (DanStem)
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| Street address |
Blegdamsvej 3B
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| City |
Copenhagen |
| ZIP/Postal code |
DK-2200 |
| Country |
Denmark |
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| Platforms (1) |
| GPL11258 |
Agilent-015066 Xenopus Gene Expression Microarray (Probe Name version) |
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| Samples (16)
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| GSM1152664 |
Control Whole embryo, stage 9, Replicate 1 |
| GSM1152665 |
Control Whole embryo, stage 9, Replicate 2 |
| GSM1152666 |
Control Whole embryo, stage10, Replicate 1 |
| GSM1152667 |
Control Whole embryo, stage 10, Replicate 2 |
| GSM1152668 |
Control Animal caps, stage 9, Replicate 1 |
| GSM1152669 |
Control Animal caps, stage 9, Replicate 2 |
| GSM1152670 |
Control Animal caps, stage10, Replicate 1 |
| GSM1152671 |
Control Animal caps, stage 10, Replicate 2 |
| GSM1152672 |
PVD2 morphant Whole embryo, stage 9, Replicate 1 |
| GSM1152673 |
PVD2 morphant Whole embryo, stage 9, Replicate 2 |
| GSM1152674 |
PVD2 morphant Whole embryo, stage10, Replicate 1 |
| GSM1152675 |
PVD2 morphant Whole embryo, stage 10, Replicate 2 |
| GSM1152676 |
PVD2 morphant Animal caps, stage 9, Replicate 1 |
| GSM1152677 |
PVD2 morphant Animal caps, stage 9, Replicate 2 |
| GSM1152678 |
PVD2 morphant Animal caps, stage10, Replicate 1 |
| GSM1152679 |
PVD2 morphant Animal caps, stage 10, Replicate 2 |
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| Relations |
| BioProject |
PRJNA206188 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE47578_RAW.tar |
203.9 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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