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Series GSE47497 Query DataSets for GSE47497
Status Public on Jun 13, 2013
Title Induction of a hemogenic program in mouse fibroblasts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Definitive hematopoiesis emerges during embryogenesis via an endothelial-to-hematopoietic transition. We attempted to induce this process in mouse fibroblasts by screening a panel of factors for hemogenic activity. We identified a combination of four transcription factors, Gata2, Gfi1b, cFos, and Etv6 that efficiently induces endothelial-like precursor cells with the subsequent appearance of hematopoietic cells. The precursor cells express a human CD34 reporter, Sca1 and Prominin1 within a global endothelial transcription program. Emergent hematopoietic cells possess nascent/specifying hematopoietic stem cell gene expression profiles and cell surface phenotypes. After transgene silencing and reaggregation culture, the specified cells generate hematopoietic colonies in vitro. Thus, we have shown that a simple combination of transcription factors is sufficient to induce a complex, dynamic and multi-step developmental program in vitro. These findings provide insights into the specification of definitive hemogenesis and a platform for future development of patient-specific stem/progenitor cells as well as more differentiated blood products.
 
Overall design mRNA-seq profiling on populations generated after transduction with Gata2, Gfi1b, cFos and Etv6 at day 20 and day 35.
 
Contributor(s) Chang B, Pereira CF, Moore K, Lemischka IR
Citation(s) 23770078
Submission date May 29, 2013
Last update date May 15, 2019
Contact name Betty Chang
E-mail(s) filipe.pereira@uc-biotech.pt
Organization name Mount Sinai School of Medicine
Street address 1425 Madison Ave
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (8)
GSM1151194 mefs_1_FPKM
GSM1151195 mefs_A_FPKM
GSM1151196 day20_2_FPKM
Relations
BioProject PRJNA205868
SRA SRP023312

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Supplementary file Size Download File type/resource
GSE47497_genes.fpkm_tracking.gz 2.0 Mb (ftp)(http) FPKM_TRACKING
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Raw data are available in SRA
Processed data are available on Series record

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