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Series GSE47117 Query DataSets for GSE47117
Status Public on May 14, 2014
Title 3' RNA-Seq (3'SEQ) analysis gene expression profiling at G1-S transition in human embryonic stem cells (hESCs) and hESC-derived endoderm cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In this report, we examine transcripts on a genome-wide level between the synchronized cell cycles of hESCs and hESC-derived endoderm cells. We found 10347, 10299 and 10362 genes expressed in the G1, G1/S, and S phase of hESCs, respectively; 10333, 10227 and 10215 genes expressed at the G1, G1/S and S phase of derived endoderm. We compared the transcriptome between these data sets and identified genes with differentiated phase expression between hESCs and hESC-derived endoderm cells.
Overall design Examination of the transcriptome at the G1-S transition in hESCs compared to hESC-derived endoderm cells.
Contributor(s) Zhu H, Chuong E, Baker J
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Submission date May 20, 2013
Last update date May 15, 2019
Contact name Edward Chuong
Organization name University of Colorado Boulder
Department BioFrontiers
Lab Chuong
Street address 596 UCB
City Boulder
ZIP/Postal code 80304
Country USA
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (6)
GSM1145195 hESCs G1 phase (day0-0 h)
GSM1145196 hESCs G1/S phase (day0-2 h)
GSM1145197 hESCs S phase (day0-3 h)
BioProject PRJNA203662
SRA SRP022920

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Supplementary file Size Download File type/resource
GSE47117_regions.annotated.vsd.txt.gz 612.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
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