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Series GSE46662 Query DataSets for GSE46662
Status Public on Jun 12, 2013
Title Tcf-1 expression in murine thymus
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The DNA binding factor Tcf-1 is one of the most prominently expressed genes in thymocytes yet its global DNA binding pattern remained unknown. Here we have assessed by ChIP-seq the Tcf-1 binding pattern in murine thymocytes in WT B6 mice and in mice expressing a stabilized form of the Tcf-1 binding partner beta-Catenin (CAT mice).
 
Overall design Tcf-1 ChIP-seq of 2 samples and 2 input controls and H3K4mel3 ChIP-seq of 1 sample and 1 input control.
 
Contributor(s) Dose M, Gounari F
Citation(s) 23741008, 24371308, 24574339
Submission date May 06, 2013
Last update date May 15, 2019
Contact name Marei Dose
E-mail(s) marei.dose@nih.gov
Organization name National Institutes of Health
Street address 9000 Rockville Pk
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (6)
GSM1133644 Tc1f_WT
GSM1133645 Input_Tcf1_WT
GSM1285796 Tcf1_CAT
Relations
BioProject PRJNA201421
SRA SRP022127

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46662_RAW.tar 151.0 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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