|
| Status |
Public on Apr 05, 2013 |
| Title |
Transcriptome Sequencing in wild and domesticated tomato species |
| Organisms |
Solanum lycopersicum; Solanum pimpinellifolium; Solanum pennellii; Solanum habrochaites |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA-seq of seedlings of four tomato species Solanum habrochaites, Solanum lycopersicum, Solanum pimpinelliolium, and Solanum pennellii. An additional panel of samples include many tissues from Solanum lycopersicum and Solanum pennellii in two light conditions
|
| |
|
| Overall design |
Tissue experiement was designed as a complete factorial and the seedling experiment includes for species with seven or eight replicates
SRA_study_accession: SRP019504
|
| |
|
| Contributor(s) |
Koenig D, Maloof J |
| Citation(s) |
23803858 |
| Submission date |
Apr 04, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Daniel Koenig |
| E-mail(s) |
dan.koenig@tuebingen.mpg.de
|
| Organization name |
Max Planck Institute for Developmental Biology
|
| Department |
Molecular Biology
|
| Lab |
Weigel
|
| Street address |
Spemmannstr 30
|
| City |
Tuebingen |
| ZIP/Postal code |
72070 |
| Country |
Germany |
| |
|
| Platforms (4)
|
| GPL10518 |
Illumina Genome Analyzer II (Solanum lycopersicum) |
| GPL16958 |
Illumina Genome Analyzer II (Solanum pimpinellifolium) |
| GPL16959 |
Illumina Genome Analyzer II (Solanum habrochaites) |
| GPL16960 |
Illumina Genome Analyzer II (Solanum pennellii) |
|
| Samples (52)
|
|
| Relations |
| BioProject |
PRJNA196243 |
| SRA |
SRP019504 |
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