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Status |
Public on Mar 13, 2013 |
Title |
H3 antibody3.OR Head Nuclei |
Project |
modENCODE
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Organism |
Drosophila melanogaster |
Experiment type |
Genome binding/occupancy profiling by genome tiling array
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Summary |
modENCODE_submission_4180 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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Overall design |
EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Mixed Adult; Genotype: wild type; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Antibody H3 antibody3 (target is H3); Developmental Stage Mixed Adult
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Web link |
http://www.modencode.org
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Contributor(s) |
Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
BioProject |
PRJNA63467 |
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Submission date |
Mar 12, 2013 |
Last update date |
Jul 08, 2015 |
Contact name |
DCC modENCODE |
E-mail(s) |
help@modencode.org
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Phone |
416-673-8579
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Organization name |
Ontario Institute for Cancer Research
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Lab |
modENCODE DCC
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Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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City |
Toronto |
State/province |
Ontario |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
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Platforms (1) |
GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
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Samples (4)
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GSM1096709 |
H3 antibody3 OR Head Nuclear D.melanogaster Input Rep1 |
GSM1096710 |
H3 antibody3 OR Head Nuclear D.melanogaster Input Rep2 |
GSM1096711 |
H3 antibody3 OR Head Nuclear D.melanogaster ChIP Rep1 |
GSM1096712 |
H3 antibody3 OR Head Nuclear D.melanogaster ChIP Rep2 |
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Supplementary file |
Size |
Download |
File type/resource |
GSE45057_RAW.tar |
181.4 Mb |
(http)(custom) |
TAR (of BEDGRAPH, CEL) |
GSE45057_repset.15663118.smoothedM.bedgraph.gz |
41.6 Mb |
(ftp)(http) |
BEDGRAPH |
Processed data provided as supplementary file |
Processed data are available on Series record |
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