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Series GSE44262 Query DataSets for GSE44262
Status Public on Sep 10, 2013
Title Beta cell 5’-shifted isomiRs are candidate regulatory hubs in type 2 diabetes
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed deep sequencing of small RNA from mouse insulinoma (MIN6) cells cultured in 25mM glucose. We then developed and implemented an in-house short-read mapping strategy to analyze isomiR diversity.
Overall design Profile of miRNA expression in MIN6 cells cultured in 25mM glucose.
Contributor(s) Baran-Gale J, Sethupathy P
Citation(s) 24039891
Submission date Feb 12, 2013
Last update date May 15, 2019
Contact name Jeanette Baran-Gale
Organization name University of North Carolina at Chapel Hill
Lab Sethupathy & Purvis Labs
Street address 120 Mason Farm Rd.
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (3)
GSM1185203 HighGlucose-small-RNAseq-rep1
GSM1185204 HighGlucose-small-RNAseq-rep2
GSM1185205 HighGlucose-small-RNAseq-rep3
BioProject PRJNA189264
SRA SRP027317

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44262_RAW.tar 23.2 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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