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GEO accession:
Series GSE43791
Query DataSets for GSE43791
Status
Public on Jan 01, 2015
Title
Redefinition of Human Androgen Responsive Elements
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25535248
Submission date
Jan 28, 2013
Last update date
May 15, 2019
Contact name
Xun Lan
E-mail(s)
xlan@stanford.edu
Phone
7738345917
Organization name
Stanford University
Department
Genetics
Lab
Pritchard's Lab
Street address
318 Campus Dr. Room S240
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platforms (2)
GPL10999
Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
Samples (40)
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GSM1068136
LNCaP control FoxA1
GSM1068137
LNCaP DHT treated FoxA1
GSM1069669
LNCaP_CON_rep1
GSM1069670
LNCaP_CON_rep2
GSM1069671
H3K27Me3_rep1
GSM1069672
H3K27Me3_rep2
GSM1069673
H3K4Me1_090920_s_2
GSM1069674
H3K4Me1_090920_s_3
GSM1069675
H3K4Me2_090526_s_2
GSM1069676
H3K4Me2_090707_s_6
GSM1069677
H3K4Me3_090920_s_7
GSM1069678
H3K4Me3_090920_s_8
GSM1069679
H3K9Me3_rep1
GSM1069680
H3K9Me3_rep2
GSM1069681
LNCaP_DHT_rep1
GSM1069682
LNCaP_DHT_rep2
GSM1071276
LNCaP control [ChIP-exo replicate 1 ]
GSM1071277
LNCaP control [ChIP-exo replicate 2 ]
GSM1071278
LNCaP control [RNA-seq replicate 1 ]
GSM1071279
LNCaP control [RNA-seq replicate 2 ]
GSM1071280
LNCaP DHT treated [ChIP-exo replicate 1 ]
GSM1071281
LNCaP DHT treated [ChIP-exo replicate 2 ]
GSM1071282
LNCaP DHT treated [RNA-seq replicate 1 ]
GSM1071283
LNCaP DHT treated [RNA-seq replicate 2 ]
GSM1071284
non-malignant adjacent tissue 1 (N1) [ChIP-exo replicate 1 ]
GSM1071285
non-malignant adjacent tissue 1 (N1) [ChIP-exo replicate 2 ]
GSM1071286
non-malignant adjacent tissue 2 (N2) [ChIP-exo replicate 1 ]
GSM1071287
non-malignant adjacent tissue 2 (N2) [ChIP-exo replicate 2 ]
GSM1071288
malignant prostate tumor 1 (M1) [ChIP-exo replicate 1 ]
GSM1071289
malignant prostate tumor 1 (M1) [ChIP-exo replicate 2 ]
GSM1071290
malignant prostate tumor 2 (M2) [ChIP-exo replicate 1 ]
GSM1071291
malignant prostate tumor 2 (M2) [ChIP-exo replicate 2 ]
GSM1071292
malignant prostate tumor 3 (M3) [ChIP-exo replicate 1 ]
GSM1071293
malignant prostate tumor 3 (M3) [ChIP-exo replicate 2 ]
GSM1071294
malignant prostate tumor 4 (M4) [ChIP-exo replicate 1 ]
GSM1071295
malignant prostate tumor 4 (M4) [ChIP-exo replicate 2 ]
GSM1236921
Bicalutamide, replicate 1
GSM1236922
Bicalutamide, replicate 2
GSM1236925
Enzalutamide, replicate 1
GSM1236926
Enzalutamide, replicate 2
This SuperSeries is composed of the following SubSeries:
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GSE43678
Redefinition of Human Androgen Responsive Elements [FOX_ChIP_exo]
GSE43720
Redefinition of Human Androgen Responsive Elements [MNase-Seq, ChIP_seq]
GSE43785
Redefinition of Human Androgen Responsive Elements [ChIP-Seq, RNA-Seq]
GSE51063
Redefinition of Human Androgen Responsive Elements [LNCaP_ChIP-exo]
Relations
BioProject
PRJNA187448
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Supplementary file
Size
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File type/resource
GSE43791_RAW.tar
80.6 Gb
(http)
(custom)
TAR (of BED, BW, TAGALIGN)
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