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Series GSE43078 Query DataSets for GSE43078
Status Public on Jan 28, 2013
Title The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The histone modifying complexes PRC2 and TrxG/MLL play pivotal roles in determining the activation state of genes controlling pluripotency, lineage commitment, and cell differentiation. Long non-coding RNAs (lncRNAs) can bind to either complex, and some have been shown to act as modulators of PRC2 or TrxG/MLL activity. Here we show that the lateral mesoderm-specific lncRNA Fendrr is essential for proper heart and body wall development in the mouse. Embryos lacking Fendrr displayed upregulation of several transcription factors controlling lateral plate or cardiac mesoderm differentiation, accompanied by a drastic reduction in PRC2 occupancy along with decreased H3K27 trimethylation and/or an increase in H3K4 trimethylation at their promoters. Fendrr binds to both the PRC2 and TrxG/MLL complexes, suggesting that it acts as modulator of chromatin signatures that define gene activity. Thus, our work identifies a lncRNA that plays an essential role in fine-tuning the regulatory networks which control the fate of lateral mesoderm derivatives.
Overall design The transcriptomes of ventricles isolated from wildtype (WT) and Fendrr knock-out (KO) E12.5 embryos, obtained from tratraploid complementations of embryonic stem cells, were analyzed by strand-specific RNA-Seq of ribosomal RNA-depleted, total RNA.
Contributor(s) Grote P, Wittler L, Währisch S, Hendrix D, Koch F, Beisaw A, Scholze M, Macura K, Bläss G, Kellis M, Werber M, Herrmann BG
Citation(s) 23369715
Submission date Dec 20, 2012
Last update date May 15, 2019
Contact name Frederic Koch
Organization name Max Planck Institute for Molecular Genetics
Department Developmental Genetics
Street address Ihnestraße 63-73
City Berlin
ZIP/Postal code 14195
Country Germany
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (2)
GSM1056116 WT
GSM1056117 KO
SRA SRP017632
BioProject PRJNA184736

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Supplementary file Size Download File type/resource
GSE43078_FPKM.txt.gz 236.2 Kb (ftp)(http) TXT
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