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Series GSE42662 Query DataSets for GSE42662
Status Public on Dec 10, 2012
Title UC San Diego Friedmann Kang Neuronal Differentiation DSD3 SNM
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The gene expression pattern of spherical neural masses (SNM) derived from HPRT knockdown murine D3 stem cells during neuronal differentiation to final neurons was invesitigated by RNA-Seq based gene expression analysis and the results were interpreted by GO, GSEA and signaling pathway analyses with Avadis NGS and PANTHER Classification System.
Overall design For RNA-Seq experiment, total RNAs of HPRT knockdown and control SNMs were extracted time-sequentially during the SNM differentiation such as differentiation-day 0, 1, 2, 3, 4, 6, 8, 10, 12, and 14 to final neurons, and each prepared library applied to the HiSeq 2000 sequencer of Illumina for 50 cycles of single lane run.
Contributor(s) Kang TH, Friedmann T
Citation(s) 24130677
Submission date Nov 30, 2012
Last update date Sep 11, 2019
Contact name Tae Hyuk Kang
Phone 853-534-1419
Fax 858-534-1422
Organization name University of California, San Diego
Department Pediatrics
Lab Dr. Friedmann's laboratory
Street address 9500 Gilman Drive # 0634
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (20)
GSM1047941 Control SNM (0 day)
GSM1047945 Control SNM (1 day)
GSM1047946 Control SNM (2 day)
BioProject PRJNA182732
SRA SRP017396

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42662_Control_0_and_1_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_10_and_12_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_12_and_14_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_1_and_2_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_2_and_3_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_3_and_4_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_4_and_6_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_6_and_8_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Control_8_and_10_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_0_and_1_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_10_and_12_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_12_and_14_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_1_and_2_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_2_and_3_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_3_and_4_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_4_and_6_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_6_and_8_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_HPRT_KD_8_and_10_day.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_Readme.txt 728 b (ftp)(http) TXT
GSE42662_SNM_0_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_10_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_12_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_14_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_1_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_2_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_3_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_4_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_6_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
GSE42662_SNM_8_day_Control_and_HPRT_knockdown.txt.gz 1.4 Mb (ftp)(http) TXT
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