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Series GSE41082 Query DataSets for GSE41082
Status Public on Aug 05, 2015
Title High-throughput sequencing of mouse liver transcriptome in Clock mutant animals
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Circadian profile of polyA RNA by RNA-Seq, collected from ClockΔ19 mouse liver at CT22, CT28, CT34, CT40. RNA from three livers pooled per time point.
Overall design 4 Clock mutant samples with no replicates
Contributor(s) Lahens NF, Hughes ME, Hong H, Grant GR, Gregory BD, Takahashi JS, Hogenesch JB
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Submission date Sep 21, 2012
Last update date May 15, 2019
Contact name Nicholas Lahens
Organization name University of Pennsylvania
Department ITMAT
Street address Smilow Center for Translational Research 10-110 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (4)
GSM1008403 Clk-Mut CT22
GSM1008404 Clk-Mut CT28
GSM1008405 Clk-Mut CT34
BioProject PRJNA175697
SRA SRP015846

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41082_RAW.tar 446.1 Mb (http)(custom) TAR (of BED, BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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