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Series GSE41082 Query DataSets for GSE41082
Status Public on Aug 05, 2015
Title High-throughput sequencing of mouse liver transcriptome in Clock mutant animals
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Circadian profile of polyA RNA by RNA-Seq, collected from ClockΔ19 mouse liver at CT22, CT28, CT34, CT40. RNA from three livers pooled per time point.
 
Overall design 4 Clock mutant samples with no replicates
 
Contributor(s) Lahens NF, Hughes ME, Hong H, Grant GR, Gregory BD, Takahashi JS, Hogenesch JB
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Sep 21, 2012
Last update date May 15, 2019
Contact name Nicholas Lahens
Organization name University of Pennsylvania
Department ITMAT
Street address Smilow Center for Translational Research 10-110 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (4)
GSM1008403 Clk-Mut CT22
GSM1008404 Clk-Mut CT28
GSM1008405 Clk-Mut CT34
Relations
BioProject PRJNA175697
SRA SRP015846

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41082_RAW.tar 446.1 Mb (http)(custom) TAR (of BED, BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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