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Series GSE40691 Query DataSets for GSE40691
Status Public on Sep 24, 2012
Title ENCODE SUNY RNA Binding Protein Tiling Data for K562 and GM12878
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by genome tiling array
Summary RNA Binding Protein immunoprecipitation study for multiple target proteins in K562 & GM12878 cell lines as part of the ENCODE consortium.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design Three sample replicates per sample type. Total input RNA and Negative target RIP (antibody for bacteriophage coat protein) are provided as controls. Individual samples reflect reflect biological replicates defined as separate RIP runs (as opposed to technical replicate defined as multiple arrays run with same RIP sample as starting material).
Web link http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=296267047&c=chr18&g=wgEncodeSunyAlbanyTiling#TRACK_HTML
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Tenenbaum SA, Doyle FJ
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA30709
Submission date Sep 07, 2012
Last update date Sep 24, 2012
Contact name Frank Doyle
Organization name UAlbany CNSE
Department Nanobiology
Lab Tenenbaum
Street address 257 Fuller Rd
City Albany
State/province NY
ZIP/Postal code 12203
Country USA
 
Platforms (1)
GPL3111 Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35
Samples (8)
GSM999236 K562 Input(Total) RNA
GSM999237 K562 Negative Control RNA
GSM999238 K562 ELAVL1 RIP RNA

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40691_RAW.tar 490.6 Mb (http)(custom) TAR (of BROADPEAK, CEL, CHP)
Processed data provided as supplementary file
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