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Series GSE40667 Query DataSets for GSE40667
Status Public on Sep 08, 2012
Title CTCF binding patterns in mouse trophoblast stem cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This Series reports data from a CTCF ChIP-Seq experiment performed in F1-hybrid mouse trophoblast stem cells (TSCs). The data are part of a larger study examining inactive X gene expression and chromatin states, reported as GEO Series GSE39406. Included for this dataset are FASTQ files, BED alignments and WIG files with coordinates relative to UCSC genome build mm9, and _snp files that report the location of all SNP-overlapping reads
Overall design Single CTCF ChIP-Seq experiment
Citation(s) 22906166
Submission date Sep 06, 2012
Last update date May 15, 2019
Contact name J Mauro Calabrese
Phone 919-843-3257
Organization name UNC-Chapel Hill
Department Pharmacology
Street address 120 Mason Farm Road
City Chapel Hill
State/province NC
ZIP/Postal code 27516
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (1)
GSM998993 CTCF #2
BioProject PRJNA174628
SRA SRP015460

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40667_RAW.tar 906.8 Mb (http)(custom) TAR (of BED, TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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