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Series GSE40109 Query DataSets for GSE40109
Status Public on Dec 11, 2013
Title Polycomb-dependent H3K27me1 and H3K27me2 characterization in mouse ES cells (E14 and E36 with H3K27me1/2 and H3)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary These data include the genome wide location analysis of H3K27me1/2/ac and H3K4me1/3 by ChIP in mouse ES cells.
Overall design Precipitation of formaldehyde cross-linked chromatin prepared from mouse ES cell using specific antibodies against Histone H3 and its specific modifications. Rabbit IgG were used as control.
Contributor(s) Ferrari KJ, Jammula G, Pasini D
Citation(s) 24289921
Submission date Aug 14, 2012
Last update date May 15, 2019
Contact name Sri Ganesh Jammula
Organization name IFOM-IEO
Street address Via Adamello 16
City Milan
ZIP/Postal code 20139
Country Italy
Platforms (2)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (5)
GSM985052 E14_H3
GSM985053 E14_H3K27me2
GSM985054 E14_H3K27me1
This SubSeries is part of SuperSeries:
GSE40118 Polycomb-dependent H3K27me1 and H3K27me2 characterization in mouse ES cells
BioProject PRJNA172860
SRA SRP014845

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40109_RAW.tar 2.0 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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