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Series GSE40005 Query DataSets for GSE40005
Status Public on Aug 10, 2012
Title Genome-wide methylation profile of head and neck squamous cell carcioma (HNSCC)
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of normal and HNSCC blood samples. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in serum samples. Samples included 12 cancer-free healthy controls, and 12 HNSCC cases.
Overall design Bisulphite-converted DNA from the 24 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip.
Contributor(s) Athanasios Z, Yoon A, Wang S
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Submission date Aug 09, 2012
Last update date Mar 22, 2019
Contact name Athanasios Zavras
Organization name Columbia University
Street address 630 West 168th St.
City New York
State/province NY
ZIP/Postal code 10032
Country USA
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM983212 genomic DNA from blood 1
GSM983213 genomic DNA from blood 2
GSM983214 genomic DNA from blood 3
BioProject PRJNA172337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40005_RAW.tar 183.1 Mb (http)(custom) TAR
GSE40005_signal_intensities.txt.gz 57.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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