GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE39565 Query DataSets for GSE39565
Status Public on Jul 22, 2015
Title Evaluation of the whole genome amplification of bisulfite modified DNA
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary We compared genom-wide DNA methylation profiles between whole genome amplified bisufite-modified DNA and non-amplified DNA.
Overall design 3 samples were bisulfite-converted, non-amplified DNA (technical triplicate). 6 samples were amplified with EpiTect® Whole Bisulfitome from 10ng or 50ng of bisulfite-converted DNA. All samples were hybridized to the Illumina Infinium HumanMethylation450.
Contributor(s) Bundo M, Sunaga F, Ueda J, Kato T, Kasai K, Iwamoto K
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 23, 2012
Last update date Mar 22, 2019
Contact name Junko Ueda
Organization name RIKEN
Department BSI
Lab Laboratory for Molecular Dynamics of Mental Disorders
Street address Hirosawa 2-1
City Wako-shi
State/province Saitama-ken
ZIP/Postal code 351-0106
Country Japan
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (9)
GSM971748 Human_bisulfite_1
GSM971749 Human_bisulfite_2
GSM971750 Human_bisulfite_3
BioProject PRJNA171142

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39565_RAW.tar 183.1 Mb (http)(custom) TAR
GSE39565_signal_intensities.txt.gz 38.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap