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Series GSE39496 Query DataSets for GSE39496
Status Public on Dec 05, 2013
Title Polycomb-dependent H3K27me1 and H3K27me2 characterization in mouse ES cells (E36 with H3K27ac, H3K27me1, and H3K4me1/3)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary These data include the genome wide location analysis of H3K27me1/2/ac and H3K4me1/3 by ChIP in mouse ES cells.
Overall design Precipitation of formaldehyde cross-linked chromatin prepared from mouse ES cell using specific antibodies against Histone H3 and its specific modifications. Rabbit IgG were used as control.
Contributor(s) Ferrari KJ, Jammula SG, Pasini D
Citation(s) 24289921
Submission date Jul 19, 2012
Last update date May 15, 2019
Contact name Sri Ganesh Jammula
Organization name IFOM-IEO
Street address Via Adamello 16
City Milan
ZIP/Postal code 20139
Country Italy
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (10)
GSM970219 E36_Eed_+/+_Input
GSM970220 E36_Eed_-/-_Input
GSM970221 E36_Eed_+/+_H3K27ac
This SubSeries is part of SuperSeries:
GSE40118 Polycomb-dependent H3K27me1 and H3K27me2 characterization in mouse ES cells
SRA SRP014476
BioProject PRJNA171032

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39496_RAW.tar 4.2 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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