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| Status |
Public on Jun 20, 2012 |
| Title |
Nanoarchaeum equitans small RNA analysis |
| Organism |
Nanoarchaeum equitans |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
We report the profiling of small RNAs from Nanoarchaeum equitans by high-throughput sequencing. Over 16 million Illumina HiSeq 2000 reads were mapped to the 490,885-nucleotide small genome of Nanoarchaeum equitans. The mapping allowed the identification of highly abundant C/D box sRNAs and crRNAs in an organism that has to import its nucleotides from Ignicoccus hospitalis. The precursor tRNA halves of trans-spliced tRNAs were identified.
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| |
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| Overall design |
Analysis of small RNA from one sample of Nanoarchaeum equitans.
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| Contributor(s) |
Randau L |
| Citation missing |
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| |
| Submission date |
Jun 19, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Lennart Randau |
| E-mail(s) |
lennart.randau@mpi-marburg.mpg.de
|
| Organization name |
MPI for terrestrial microbiology
|
| Street address |
Karl-von-Frisch Strasse 10
|
| City |
Marburg |
| ZIP/Postal code |
35043 |
| Country |
Germany |
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| Platforms (1) |
| GPL15717 |
Illumina HiSeq 2000 (Nanoarchaeum equitans) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA169032 |
| SRA |
SRP013830 |
