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| Status |
Public on Mar 21, 2012 |
| Title |
P. pacificus young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours |
| Organism |
Pristionchus pacificus |
| Experiment type |
Expression profiling by array
|
| Summary |
Transcriptional profiling of P. pacificus young adult worms exposed to pathogen Xenorhabdus nematophila for 4 hours versus age-matched worms exposed to control lab food E. coli OP50. The goal was to identify genes regulated in response to pathogen. The broader goal of study was to study evolution of pathogen response by comparing this expression profile to that obtained by exposing the nematode C. elegans to the same pathogen. Other experiments which are a part of this study include expression profiling of C. elegans and P. pacificus on other pathogens including Bacillus thuringiensis DB27, Staphylococcus aureus, and Serratia marcescens.
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| Overall design |
One-condition experiments.
P. pacificus young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours. 4 biological replicates for each condition, including 2 dye-swaps.
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| Contributor(s) |
Sinha A, Rae R, Iatsenko I, Sommer RJ |
| Citation(s) |
23028509 |
| |
| Submission date |
Mar 15, 2012 |
| Last update date |
Dec 20, 2012 |
| Contact name |
Amit Sinha |
| E-mail(s) |
asinha@neb.com
|
| Organization name |
New England Biolabs
|
| Street address |
240 County Road
|
| City |
Ipswich |
| State/province |
MA |
| ZIP/Postal code |
01938 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL14372 |
Agilent-025090 P.pacificus-version2 |
|
| Samples (4)
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| GSM896085 |
P. pacificus: Xenorhabdus nematophila vs. E. coli OP50 exposure; 4hours, Biological Replicate 1 |
| GSM896086 |
P. pacificus: Xenorhabdus nematophila vs. E. coli OP50 exposure; 4hours, Biological Replicate 2 |
| GSM896087 |
P. pacificus: Xenorhabdus nematophila vs. E. coli OP50 exposure; 4hours, Biological Replicate 3 (Dye-swap) |
| GSM896088 |
P. pacificus: Xenorhabdus nematophila vs. E. coli OP50 exposure; 4hours, Biological Replicate 4 (Dye-swap) |
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| This SubSeries is part of SuperSeries: |
| GSE36636 |
P. pacificus and C. elegans exposed to various pathogens |
|
| Relations |
| BioProject |
PRJNA155605 |
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