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Series GSE35991 Query DataSets for GSE35991
Status Public on Jun 18, 2012
Title Affymetrix SNP array data for a melanoma lesion and a cellline derived thereof
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary Here we report on a bulk culture termed MCM1, which was derived from a 61 year old male diagnosed with a nodular melanoma stage T2a, N0. At passage three of culturing, DNA was isolated and Affymetrix SNP6.0 array hybridizations were performed. Cultured MCM1 cells revealed overall identical copy number gains and losses as compared with the primary patient-derived lesion and were therefore used in this study.
 
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA, which was extracted from a patient derived melanoma sample and from a cellline generated from the same melanoma sample at passage three.
 
Contributor(s) Mikula M, Petzelbauer P
Citation(s) 22570180
Submission date Feb 21, 2012
Last update date Nov 27, 2018
Contact name Mario Mikula
Organization name Medical University Vienna
Department General Dermatology
Lab SERD
Street address Waehringerg├╝rtel 18-20
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (2)
GSM878880 Melanoma primary lesion
GSM878881 Melanoma cell line
Relations
BioProject PRJNA151679

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35991_RAW.tar 85.3 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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