|
| Status |
Public on Apr 09, 2012 |
| Title |
ChIP-Seq for Nkx3-1 in whole mouse prostate |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the genome-wide binding sites of the NK homeodomain transcription factor, Nkx3-1, in mouse prostate. Three different mouse genotypes were used: Nkx3-1 wild-type (WT), Nkx3-1 heterozygote (HET), and Nkx3-1 knock-out (KO). Two biological replicates were performed for WT and HET, and one replicate for KO. The mice used were a recombinant inbred C57BL6/J x 129 strain. The KO dataset was used as a control in lieu of an IgG.
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| |
|
| Overall design |
Examination of Nkx3-1 binding sites in Nkx3-1+/+ (WT), +/- (HET) and -/- (KO) mouse prostates
|
| |
|
| Contributor(s) |
Anderson PD, McKissic SA, Abdulkadir SA |
| Citation(s) |
22484818 |
| |
| Submission date |
Feb 21, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Philip D Anderson |
| Organization name |
Vanderbilt University
|
| Department |
Pathology
|
| Street address |
B3321; 1161 21st Ave.
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
|
| Samples (5)
|
|
| Relations |
| SRA |
SRP011004 |
| BioProject |
PRJNA151621 |
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