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Series GSE34566 Query DataSets for GSE34566
Status Public on Feb 05, 2013
Title The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo (ChIP-seq data)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We established whether partner transcription factor binding, chromatin structure, or gene expression is compromised upon loss of partner factors cdx2 or hnf4a in mouse intestinal villi. This metadata file describes the ChIP-seq componant of that data
Overall design Intestinal epithelia were collected from mouse jejunum using EDTA-based chelation and ChIP-seq was performed, followed by next generation sequencing.
Contributor(s) Liu XS, Shin H, Verzi MP, Shivdasani R
Citation(s) 23129810, 25488664
Submission date Dec 20, 2011
Last update date May 15, 2019
Contact name Michael P Verzi
Organization name Rutgers, the State University of New Jersey
Department Genetics
Lab Verzi
Street address 145 Bevier Road
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (11)
GSM851117 CDX2 ChIP-Seq in WT mouse villus cells
GSM851118 CDX2 ChIP-Seq in WT mouse villus cells-2
GSM851119 CDX2 ChIP-Seq in Hnf4a KO mouse villus cells
This SubSeries is part of SuperSeries:
GSE34568 The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo
SRA SRP009904
BioProject PRJNA156201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34566_RAW.tar 18.8 Mb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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