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Series GSE33355 Query DataSets for GSE33355
Status Public on Dec 31, 2012
Title Affymetrix SNP array data for Non-Smoking Female Lung Cancer in Taiwan
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Genome-Wide Screening of Genomic Alterations and Transcriptional Modulation in Non-Smoking Female Lung Cancer in Taiwan
Overall design Sixty-one pairs of cancer and normal lung tissue specimens from non-smoking females were collected at National Taiwan University Hospital and Taichung Veterans General Hospital. The selection criteria of clinical specimens depend on pathology report, physical examination and cigarette-smoking history. Surgical lung tissue specimens were immediately snap-frozen in liquid N2 and stored at -80 °C. Surgical specimens would be further processed for RNA and DNA extraction. Only those samples passed quality controls were processed for gene expression profiling analysis and single nucleotide polymorphism (SNP) analysis respectively.
Contributor(s) Lu T, Lai L, Chuang EY
Citation(s) 21935476, 24650256, 25889623
Submission date Oct 31, 2011
Last update date Jan 15, 2020
Contact name Tzu-Pin Lu
Organization name National Taiwan University, Taiwan
Department Department of Public Health, Institute of Epidemiology and Preventive Medicine
Street address No. 1, Sec. 4, Roosevelt Road
City Taipei
ZIP/Postal code 10617
Country Taiwan
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (122)
GSM824988 lung15N_normal tissue_Affymetrix SNP6
GSM824989 lung15T_cancer tissue_Affymetrix SNP6
GSM824990 lung20N_normal tissue_Affymetrix SNP6
This SubSeries is part of SuperSeries:
GSE33356 Genome-wide screening of genomic alterations and transcriptional modulation in non-smoking female lung cancer in Taiwan
BioProject PRJNA154251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33355_Lung_adeno_61_pairs_intensity.txt.gz 1.2 Gb (ftp)(http) TXT
GSE33355_RAW.tar 5.4 Gb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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