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Series GSE33007 Query DataSets for GSE33007
Status Public on Mar 15, 2012
Title Genome-wide map of HBO1 in cancer derived human cell line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We used ChIP-seq technology in order to map chromatin binding sites of the HBO1 MYST complex in the RKO cell line. We obtained a significant enrichment of the HBO1 signal right after TSS regions of genes and also In the proximal promoter region, with no signal on TSS. This enrichment also correlates with gene expression level.
Overall design HBO1 signal in RKO cell line.
Contributor(s) Avvakumov N, Lalonde M, Saksouk N, Landry A, Paquet ER, Doyon Y, Cayrou C, Robitaille G, Richard D, Yang X, Kutateladze TG, Côté J
Citation(s) 22144582
Submission date Oct 16, 2011
Last update date May 15, 2019
Contact name Eric R Paquet
Organization name EPFL
Department Life sciences
Lab Naef lab
Street address Station 15 CH - 1015
City Lausanne
State/province Vaud
ZIP/Postal code 1015
Country Switzerland
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM818282 HBO1_ChIPseq
GSM818283 input DNA
This SubSeries is part of SuperSeries:
GSE33221 Conserved molecular interactions within MYST-ING acetyltransferase complexes that regulate cell proliferation
SRA SRP008926
BioProject PRJNA155519

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Supplementary file Size Download File type/resource
GSE33007_RAW.tar 572.3 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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