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Series GSE31158 Query DataSets for GSE31158
Status Public on Dec 03, 2011
Title Transient MPK6 activation in response to oxygen deprivation and reoxygenation is mediated by mitochondria and aids seedling survival in Arabidopsis.
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary MPK6 shows transient increase in activity under hypoxia with maximal activity at 2 hrs. To study the role of MPK6 in hypoxia in Arabidopsis, 10 do seedlings of WT, mpk6 and MPK6 plants were exposed to 2 hrs hypoxia and 2hr air (mock).
Because there are no major phenotypic differences between the genotypes, microarray was used to determine if there were transcript level differences between the genotypes.
 
Overall design Wild type Col-0, MPK6 overexpression and mpk6 knockout mutants were exposed to 2 hr hypoxia and air and separated into root and shoot in order to determine the role of MPK6 in hypoxia in both root and shoot.
 
Contributor(s) Chang R, Jang C, Branco-Price C, Nghiem P, Bailey-Serres J
Citation(s) 22086331
Submission date Aug 02, 2011
Last update date Aug 15, 2018
Contact name Charles Jang
E-mail(s) cjang001@student.ucr.edu
Organization name UC Riverside
Department Botany and Plant Sciences
Lab Julia Bailey-Serres
Street address 2215 Batchelor Hall
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (25)
GSM771373 Wild Type Root Normoxia (mock) Biological Rep 1
GSM771374 Wild Type Root Normoxia (mock) Biological Rep 2
GSM771375 Wild Type Shoot Normoxia (mock) Biological Rep 1
Relations
Affiliated with GSE69995
BioProject PRJNA144823

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31158_RAW.tar 58.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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