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Series GSE31008 Query DataSets for GSE31008
Status Public on Dec 01, 2011
Title A key role for Mbd3 in 5-hydroxymethylcytosine-dependent gene regulation in embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary To identify functional interactions among six chromatin regulators with key roles in embryonic stem cells, we examined gene expression changes in mouse ES cells with single and pair-wise combinations of knockdowns for those factors, along with control (EGFP) KDs.
Overall design Effects on gene expression of RNAi-mediated knockdown of combinations of chromatin regulators. KDs were performed in duplicate for each combination for 48 hours.
Contributor(s) Fazzio TG
Citation(s) 22196727
Submission date Jul 28, 2011
Last update date Jan 12, 2017
Contact name Thomas G. Fazzio
Phone 508-856-6014
Organization name University of Massachusetts Medical School
Department Program in Gene Function and Expression
Street address LRB 519, 364 Plantation Street
City Worcester
State/province MA
ZIP/Postal code 01605
Country USA
Platforms (1)
GPL7202 Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version)
Samples (44)
GSM768325 EGFP KD, replicate A
GSM768326 EGFP KD, replicate B
GSM768327 p400Mbd3 KD, replicate A
BioProject PRJNA146333

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31008_RAW.tar 95.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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