|
| Status |
Public on Mar 10, 2012 |
| Title |
Genome-wide maps of H3K4me3 and H3K27me3 in HY(Hwayong) and chd1(chr729) rice. |
| Organism |
Oryza sativa Japonica Group |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the application of CHIP-seq technology for high-throughput profiling of histone modifications in HY(Hwayong) and chd1(chr729). By obtaining about 12 million reads of sequence from chromatin immunoprecipitated DNA, we generated genome-wide H3K4me3 and H3k27me3 maps of HY(Hwayong) and chd1(chr729). We find that lysine 4 and lysine 27 trimethylation marked genes effectively losed in chd1 compared to HY.
|
| |
|
| Overall design |
Examination of two histone modifications in two rice species.
|
| |
|
| Contributor(s) |
Liu D, Zhou D |
| Citation(s) |
22451926 |
| |
| Submission date |
Jul 07, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
yongfeng hu |
| E-mail(s) |
feng2602@sina.com
|
| Organization name |
IBP
|
| Street address |
univercite paris-sud Bat 630
|
| City |
paris |
| ZIP/Postal code |
91400 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL13834 |
Illumina HiSeq 2000 (Oryza sativa Japonica Group) |
|
| Samples (4)
|
|
| Relations |
| SRA |
SRP007423 |
| BioProject |
PRJNA143507 |
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