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Series GSE29667 Query DataSets for GSE29667
Status Public on Oct 26, 2012
Title Affymetrix SNP array data for hepatocellular carcinoma tissue
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary Genetic variations play an important role in tumor development and metastasis. Hepatocellular carcinoma (HCC) is one of leading cause of cancer-related death. Despite improvements in surveillance and clinical treatment strategies, the prognosis of HCC remains dismal. Affymetrix SNP 6.0 array were used to evaluate the genetic characteristics of tumor DNA in 30 HBV-related HCC patients who were underwent liver transplantation. Recurrence related SNPs were selected and validated.
Overall design Affymetrix SNP 6.0 arrays were performed according to the manufacturer's directions on DNA extracted from formalin-fixed paraffin-embedded HCC tissues
Contributor(s) Zhou J, Hu J, Wang Z
Citation(s) 21998744
Submission date Jun 01, 2011
Last update date Nov 27, 2018
Contact name jie hu
Organization name Zhongshan hospital, Fudan University
Street address 180 Fenglin Road
City Shanghai
ZIP/Postal code 200032
Country China
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (30)
GSM735753 HCC tissue987
GSM735754 HCC tissue1326
GSM735755 HCC tissue2358
BioProject PRJNA141299

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29667_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL, CHP)
Processed data provided as supplementary file
Processed data included within Sample table

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