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Series GSE28081 Query DataSets for GSE28081
Status Public on Sep 01, 2011
Title Expression pattern of Pseudomonas aeruginosa biofilm-residing bacteria exposed to gentamicin or surface acoustic waves or gentamicin and surface acoustic waves combined
Platform organism Pseudomonas aeruginosa
Sample organism Pseudomonas aeruginosa PAO1
Experiment type Expression profiling by array
Summary Bacteria are known to respond to various environmental stimuli including nutrient deprivation, osmotic stress, and exposure to antibiotics. Our experimental data showed that P. aeruginosa biofilm formed in urinary catheters is very suseptible to gentamicin treatment when combined with exposure to surface acoustic waves
Our goal was to establish whether P. aeruginosa is capable of specifically sensing the surface acoustic waves as well as to try and decipher the molecular mechanism underlying the increased biofilm suseptibility to antibiotics treatment
 
Overall design To fully assess the bacterial response we subjected the P. aeruginosa biofilm to four different treatments: control (no treatment); gentamicin treatment alone; surface acoustic waves treatment alone and combined treatment of gentamicin with surface acoustic waves.
 
Contributor(s) Kopel M, Banin E
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Submission date Mar 22, 2011
Last update date Jul 06, 2016
Contact name Ehud Banin
E-mail(s) banine@mail.biu.ac.il
Organization name Bar-Ilan University
Street address Bldg 206
City Ramat-Gan
ZIP/Postal code 52900
Country Israel
 
Platforms (1)
GPL84 [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array
Samples (8)
GSM694306 control, biological rep 1
GSM694307 control, biological rep 2
GSM694308 Gm, biological rep 1
Relations
BioProject PRJNA139731

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28081_RAW.tar 5.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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