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| Status |
Public on Mar 23, 2011 |
| Title |
SG ORC ChIP-Seq experiment |
| Project |
modENCODE
|
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
modENCODE_submission_3253
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
|
| Overall design |
EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: SuUR - Orr-Weaver(official name : SuUR genotype : SuUR mutant outcross : 3 tags : Transposon tag : GFP description : SuUR mutant as maintained by the Orr-Weaver lab. made_by : Orr-Weaver ); Tissue: salivary gland; Developmental Stage: L3 stage wandering larvae; Genotype: SuUR mutant; EXPERIMENTAL FACTORS: read length (base pair 36) ; tissue: salivary glands; Developmental Stage L3 stage wandering larvae; Antibody (target is dORC2); strain: SuUR
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| Web link |
http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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| |
|
| Contributor(s) |
MacAlpine D, Noa S, Sharon L, George B, Eaton M, Prinz J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63463 |
| |
| Submission date |
Mar 21, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
|
| Samples (4)
|
| GSM694132 |
SG Orc ChIP-Seq extraction1_seq1 aliquote 1 |
| GSM694133 |
SG Orc ChIP-Seq extraction1_seq1 aliquote 2 |
| GSM694134 |
SG Orc ChIP-Seq extraction2_seq1 aliquote 1 |
| GSM694135 |
SG Orc ChIP-Seq extraction2_seq1 aliquote 2 |
|
| Relations |
| SRA |
SRP006149 |
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