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Series GSE277264 Query DataSets for GSE277264
Status Public on Sep 20, 2024
Title Role of Piezo1-mediated mechanotransduction in osteocyte differentiation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mechanical force is a fundamental regulator of bone development and homeostasis. Mechanosensitive osteocytes are the most abundant bone cells that form interconnected dendrites to respond to mechanical stimuli and interact with the bone-forming osteoblasts and the bone-remodeling osteoclasts. However, the molecular mechanisms underlying osteocyte maturation and dendrite formation remain unclear. By generating a Piezo1 "knock-out" osteocyte cell line, we identified a key role of Piezo1-mediated mechanotransduction in osteocyte differentiation. QRT-PCR analysis revealed delayed osteocyte differentiation in the Piezo1 KO cells relative to WT cells. By performing bulk RNA sequencing of WT and Piezo1 KO OCY454 cells at early (D1), intermediate (D14), and late (D28) stages of differentiation allowed for the identification of key signaling pathways in driving normal osteocyte dfiferentiation, as well as those regulated by Piezo1 mechanotransduction.
 
Overall design To mechanistically investigate the role of Piezo1 in osteocyte differentiation, we generated a Piezo1 "knock-out" (KO) osteocyte cell line using CRISPR-Cas9 gene editing. Exon 19 through exon 21 from the OCY454 cell line were deleted, confirmed by sanger sequencing, qRT-PCR, western blot, and immunofluroescent staining. WT and Piezo1 KO OCY454 cells were differentiated for 1 (basal), 14, and 28 days at 37C and collected for bulk RNA-sequencing analysis. Two replicates were performed for each group.
 
Contributor(s) Hu YJ, Jin Y, Liu Y, Yang Y
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Submission date Sep 16, 2024
Last update date Sep 20, 2024
Contact name Yizhong Hu
E-mail(s) yizhong_hu@hsdm.harvard.edu
Organization name Harvard School of Dental Medicine
Street address 190 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL32159 NextSeq 1000 (Mus musculus)
Samples (12)
GSM8517334 WT OCY454 D1 Rep1
GSM8517335 WT OCY454 D1 Rep2
GSM8517336 WT OCY454 D14 Rep1
Relations
BioProject PRJNA1161617

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Supplementary file Size Download File type/resource
GSE277264_counts.csv.gz 507.2 Kb (ftp)(http) CSV
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Raw data are available in SRA

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