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Series GSE276178 Query DataSets for GSE276178
Status Public on Sep 06, 2024
Title Has-miR-30c-1-3p inhibits macrophage autophagy and pro-motes Mycobacterium tuberculosis survival by targeting ATG4B and ATG9B
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Autophagy is a widespread physiological process in the body, which also protects the host by degrading invading pathogens and harmful substances during pathological conditions. However, Mycobacterium tuberculosis (MTB) can affect the process of autophagy by regulating the expres-sion of microRNAs (miRNAs), allowing for immune evasion. In this study, we constructed a model of a strong virulent strain (H37Rv) infection in human macrophage cell line. Following H37Rv infection, we screened 14 differentially expressed miRNAs by RNA-seq and bioinformatics. We predicted and demonstrated that miR-30c-1-3p inhibits autophagy and promotes macrophage survival by targeting ATG4B and ATG9B during the infection process.Additionally, the intervention of miR-30c-1-3p mimics resulted in an increased bacterial load in macrophages, suggesting that MTB achieves immune evasion by upregulating miR-30c-1-3p during infection. In conclusion, our study provides a valuable target for the development of host-directed anti-tuberculosis therapy as well as a new diagnostic marker.
 
Overall design To investigate the effect of miRNAs expression on macrophage autophagy after macrophages were infected with Mycobacterium tuberculosis.Total RNA was extracted from THP-1 cells infected with H37Rv for 2h and blank control and subjected to RNA-seq to analyze differentially expressed miRNAs associated with autophagy.
 
Contributor(s) Peng X, Pu F, Feng J, Xia P
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Submission date Sep 02, 2024
Last update date Sep 25, 2024
Contact name Xianglin Peng
E-mail(s) m202176487@alumni.hust.edu.cn
Organization name Huazhong University of Science and Technology
Department Department of Orthopedics
Street address No.215, Zhongshan Road, Qiaokou District
City Wuhan
ZIP/Postal code 430022
Country China
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (2)
GSM8492635 THP-1, H37Rv, hour2
GSM8492636 THP-1, Control, hour2
Relations
BioProject PRJNA1155636

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Supplementary file Size Download File type/resource
GSE276178_AvsB.Differential_analysis_results.xls.gz 16.8 Kb (ftp)(http) XLS
GSE276178_Readcount_TPM.xls.gz 10.5 Kb (ftp)(http) XLS
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