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Series GSE273129 Query DataSets for GSE273129
Status Public on Oct 09, 2024
Title Understanding the dosage-dependent role of Dicer1 in thyroid tumorigenesis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Multiple studies suggest Dicer1 as a haploinsufficient tumor suppressor gene: while the loss of one allele promotes tumorigenesis, the complete loss of Dicer1 prevents tumor formation. To study the impact of Dicer1 partial or total loss in papillary thyroid carcinoma cells in vitro, we generated stable Dicer1 (+/-) cell lines by CRISPR-Cas9 from TPC1 cell line. No Dicer1 (-/-) cell lines could be generated. Therefore, siRNA against Dicer1 was transfected into Dicer1 (+/-) cell lines to further decrease its expression. RNA sequencing and transcriptomic analysis revealed alterations in proliferation, cell cycle and cell locomotion. BrdU staining revealed a slow-down of the cell cycle, with lower percentages of cells in S-phase and higher percentages of cells in G0-G1-phase. Furthermore, transwell invasion and migration assays showed a decrease of invasive and migrating cells following transfection of Dicer1 siRNA. These results were confirmed in two supplementary thyroid cell lines, BCPAP and H-Tori3. Additionally, to achieve high protein levels, we performed Dicer1 plasmid transfection and we observed reduced proliferation and invasion as well as increased apoptosis. Globally, our results allow us to better understand the function of Dicer1 in thyroid cancer tumorigenesis and suggest Dicer1 as an attractive target for novel therapeutic strategies.
 
Overall design To study the role of Dicer1 we knocked down Dicer1 expression by Dicer1 siRNA transfection. Therefore, cells were non transfected (NT), transfected with the negative control (NC) or transfected with Dicer1 siRNA(siDicer)
 
Contributor(s) Rojo-Pardillo M, Godefroid L, Dom G, Libert F, Lefort A, Robaye B, Maenhaut C
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Submission date Jul 25, 2024
Last update date Oct 09, 2024
Contact name MARIA ROJO PARDILLO
E-mail(s) mariarojo7.mr@gmail.com
Organization name IRIBHM J.E. DUMONT
Street address Rte de Lennik 808, 1070 Anderlecht
City brussels
ZIP/Postal code 1070
Country Belgium
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (18)
GSM8422236 TPC1 NON TRANSFECTED REPLICATA 1
GSM8422237 TPC1 NON TRANSFECTED REPLICATA 2
GSM8422238 TPC1 NON TRANSFECTED REPLICATA 3
Relations
BioProject PRJNA1140219

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE273129_processed_siDICER1.csv.gz 1.7 Mb (ftp)(http) CSV
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Raw data are available in SRA

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