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Series GSE272458 Query DataSets for GSE272458
Status Public on Oct 09, 2024
Title Cell-Type-Specific Epigenetic Priming of Gene Expression in Nucleus Accumbens by Cocaine [ATAC-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A hallmark of addiction is the ability of drugs of abuse to trigger relapse after periods of prolonged abstinence. Here, we describe a novel epigenetic mechanism whereby chronic cocaine exposure causes lasting chromatin and downstream transcriptional modifications in the nucleus accumbens (NAc), a critical brain region controlling motivation. We link prolonged withdrawal from cocaine to the depletion of the histone variant H2A.Z, coupled with increased genome accessibility and latent priming of gene transcription, in D1 dopamine receptor-expressing medium spiny neurons (D1 MSNs) that relate to aberrant gene expression upon drug relapse. The histone chaperone ANP32E removes H2A.Z from chromatin, and we demonstrate that D1 MSN-selective Anp32e knockdown prevents cocaine-induced H2A.Z depletion and blocks cocaine’s rewarding actions. By contrast, very different effects of cocaine exposure, withdrawal, and relapse were found for D2 MSNs. These findings establish histone variant exchange as an important mechanism and clinical target engaged by drugs of abuse to corrupt brain function and behavior.
 
Overall design We examined ‘open’ chromatin regions in both D1 and D2 MSN nuclei genome-wide by use of assay for transposase-accessible chromatin with sequencing (ATAC-seq) At baseline (SS), acute cocaine (SC), cocaine relapse (CC) and following chronic cocaine exposure and prolonged withdrawal (CS).
 
Contributor(s) Mews P, Van der Zee Y, Gurung A, Nestler EJ
Citation(s) 39365860
Submission date Jul 17, 2024
Last update date Oct 09, 2024
Contact name Aarthi Ramakrishnan
E-mail(s) aarthi.ramakrishnan@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Neuroscience
Street address 1425 Madison Avenue
City New York
State/province New York
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (26)
GSM8403030 D1_SS_1
GSM8403031 D1_SS_2
GSM8403032 D2_SC_1
Relations
BioProject PRJNA1136908

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Supplementary file Size Download File type/resource
GSE272458_D1_CC_peaks.txt.gz 2.3 Mb (ftp)(http) TXT
GSE272458_D1_CS_peaks.txt.gz 1.6 Mb (ftp)(http) TXT
GSE272458_D1_SC_peaks.txt.gz 1.0 Mb (ftp)(http) TXT
GSE272458_D1_SS_peaks.txt.gz 1003.7 Kb (ftp)(http) TXT
GSE272458_D2_CC_peaks.txt.gz 2.1 Mb (ftp)(http) TXT
GSE272458_D2_CS_peaks.txt.gz 1.0 Mb (ftp)(http) TXT
GSE272458_D2_SC_peaks.txt.gz 1.8 Mb (ftp)(http) TXT
GSE272458_D2_SS_peaks.txt.gz 1.9 Mb (ftp)(http) TXT
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