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Series GSE272433 Query DataSets for GSE272433
Status Public on Sep 23, 2024
Title CRISPR/Cas9 and cDNA overexpression screens to identify transmembrane transporters involved in PROTAC sensitivity/resistance
Organism Homo sapiens
Experiment type Other
Summary Proteolysis targeting chimeras (PROTACs) are bifunctional molecules that induce selective protein degradation by linking an E3 ubiquitin ligase enzyme to a target protein. Here we used transporter-focused and genome-wide CRISPR/Cas9 as well as a barcoded solute carriere (SLC)-focused cDNA libraray to screen for transporters that are involved in the resistance or sensitivity to BET- and SLC9-targeting PROTACs.
 
Overall design Drug resistance screens with CRISPR/Cas9 and cDNA overexpression libraries in HAP1 cells under PROTAC selection.
 
Contributor(s) Wolf G, Craigon C, Essletzbichler P, Onstein S, Uijttewaal E, Dvorak V, Bensimon A, Ciulli A, Superti-Furga G
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Submission date Jul 17, 2024
Last update date Sep 23, 2024
Contact name Giulio Superti-Furga
Organization name CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Street address Lazarettgasse 14
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (56)
GSM8402199 Transporter_KO_3days_DMSO_rep1
GSM8402200 Transporter_KO_3days_DMSO_rep2
GSM8402201 Transporter_KO_3days_DMSO_rep3
Relations
BioProject PRJNA1136866

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE272433_Genome_wide_KO_sgRNA_counts.txt.gz 1.4 Mb (ftp)(http) TXT
GSE272433_Transporter_KO_3_days_selection_sgRNA_counts.txt.gz 139.2 Kb (ftp)(http) TXT
GSE272433_Transporter_KO_9_days_selection_sgRNA_counts.txt.gz 148.7 Kb (ftp)(http) TXT
GSE272433_Transporter_KO_sgRNA_sequences.txt.gz 43.9 Kb (ftp)(http) TXT
GSE272433_Transporter_OE_barcode_counts.txt.gz 19.9 Kb (ftp)(http) TXT
GSE272433_Transporter_OE_cDNA_sequences.txt.gz 199.4 Kb (ftp)(http) TXT
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Raw data are available in SRA

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