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Series GSE272311 Query DataSets for GSE272311
Status Public on Jul 16, 2024
Title Hyperglycemia-independent neonatal streptozotocin-induced retinopathy (NSIR) in rats
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Chemicals, such as MNU (N-methyl-N-nitrosourea) and NaIO3 (sodium iodate), are widely used to induce retinal degeneration in rodents. Streptozotocin (STZ) is an analog of N-acetyl glucosamine in which an MNU moiety is linked to a hexose and has a special toxic effect on insulin-producing pancreatic β-cells. It is commonly used to induce hyperglycemia to model diabetes. While intracerebroventricular injection of STZ can produce Alzheimer's disease independent of hyperglycemia, most retinal studies using STZ focus on the effects of hyperglycemia on the retina, but whether STZ has any impact on retinal cells independent of hyperglycemia is unknown. We aimed to investigate the role of cytotoxicity of STZ in rat retina. Intravitreal (5ug or 10ug) or subcutaneous (30mg/kg) injection of STZ at the early stage of newborn rats couldn’t induce hyperglycemia but caused NSIR (neonatal STZ-induced retinopathy), including reduced ERG amplitudes, retinal rosettes and apoptosis, cell cycle arrest, microglial activation, and delayed retinal angiogenesis. STZ did not affect the early-born retinal cell types but significantly reduced the late-born ones. Short-term and long-term hyperglycemia had no significant effects on the NSIR phenotypes. RNA sequencing revealed that STZ induces oxidative stress and activates the p53 pathway of retinal cells. Locally or systemically, STZ injection after P8 couldn’t induce NSIR when all retinal progenitors exit the cell cycle. Thus, NSIR in rats is independent of hyperglycemia but due to STZ’s direct cytotoxic effects on retinal progenitor cells. NSIR is a typical reaction to STZ-induced retinal oxidative stress and DNA damage. This significant finding suggests that NSIR may be a valuable model for studying retinal progenitor DNA damage-related diseases, potentially leading to new insights and treatments.
 
Overall design To understand the underlying mechanism, we analyzed the transcriptome of the P4 retinas of rats receiving IVIT STZ (10ug) by RNA sequencing. We had two control groups: citrate buffer and saline. We found no deregulated genes (DEGs) enrichment between citrate buffer and saline. Thus, we focused on the differences between the STZ and citrate buffer groups.
Web link https://www.frontiersin.org/journals/pharmacology/articles/10.3389/fphar.2024.1395887/full
 
Contributor(s) Lin Y, Du W, Fu X, Huang L, Hong Y, Tan H, Xiao L, Ren X, Wang Y, Chen D
Citation(s) 39108749
Submission date Jul 16, 2024
Last update date Sep 05, 2024
Contact name Danian Chen
E-mail(s) dchen@lunenfeld.ca
Phone 86-18980605810
Organization name West China Hospital, Sichuan University
Street address 37 Guoxue Xiang Street
City Chengdu
ZIP/Postal code 610041
Country China
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (3)
GSM8398266 Buffer
GSM8398267 Saline
GSM8398268 Stz
Relations
BioProject PRJNA1136409

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE272311_RAW.tar 890.0 Kb (http)(custom) TAR (of TXT)
GSE272311_raw_counts.txt.gz 530.0 Kb (ftp)(http) TXT
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Raw data are available in SRA

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