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Series GSE270349

Query DataSets for GSE270349

Status

Public on Jun 20, 2024

Title

Transcriptomic data from a clinical cohort of men who have sex with men (MSM) and controls.

Organism

Experiment type

Expression profiling by high throughput sequencing

Summary

These samples are part of large study to understand the rectal mucosal immune environment among MSM.

Overall design

140 rectal biopsies from MSM and contols subjects from various Race, Age and Infection status groups. 57 samples previously submitted in GSE211922 (see below table of reanalyzed samples).

Contributor(s)

Smith SA, Murray PM, Amancha PK, Ackerley CG, Van Doren VE, Hu Y, Archer RA, Johnson HR, Bosinger SE, Amara RR, Kelley CF

Citation missing

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Submission date

Jun 20, 2024

Last update date

Jun 21, 2024

Contact name

Gregory K Tharp

E-mail(s)

gktharp@emory.edu

Phone

404-727-7797

Organization name

Yerkes National Primate Research Center

Department

Developmental and Cognitive Neuroscience

Lab

Genomics Core

Street address

954 Gatewood Dr

City

Atlanta

State/province

GA

ZIP/Postal code

30329-4208

Country

USA

Platforms (1)

Illumina NovaSeq 6000 (Homo sapiens)

Samples (83)

More...

GSM8340110	11_ARM-055
GSM8340111	12_ARM-036
GSM8340112	13_ARM-040

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BioProject

Data table header descriptions
GEO Sample	GEO Sample link
GEO Series	GEO Series link
SRA Experiment	SRA Run Selector link for SRA Experiment
BioSample	SRA Run Selector link for BioSample
BioProject	SRA Run Selector link for BioProject
Sample title	Title of GEO Sample record

Data table
GEO Sample	GEO Series	SRA Experiment	BioSample	BioProject	Sample title
GSM6505557	GSE211922	SRX17229397	SAMN30470398	PRJNA872820	1_ARM-003
GSM6505558	GSE211922	SRX17229396	SAMN30470397	PRJNA872820	2_ARM-005
GSM6505559	GSE211922	SRX17229395	SAMN30470396	PRJNA872820	3_ARM-012
GSM6505560	GSE211922	SRX17229394	SAMN30470395	PRJNA872820	4_ARM-017
GSM6505561	GSE211922	SRX17229405	SAMN30470394	PRJNA872820	5_ARM-018
GSM6505562	GSE211922	SRX17229404	SAMN30470393	PRJNA872820	6_ARM-021
GSM6505563	GSE211922	SRX17229403	SAMN30470392	PRJNA872820	7_ARM-022
GSM6505564	GSE211922	SRX17229402	SAMN30470391	PRJNA872820	8_ARM-028
GSM6505565	GSE211922	SRX17229401	SAMN30470390	PRJNA872820	9_ARM-023
GSM6505566	GSE211922	SRX17229400	SAMN30470389	PRJNA872820	10_ARM-052
GSM6505567	GSE211922	SRX17229399	SAMN30470388	PRJNA872820	14_ARM-015
GSM6505568	GSE211922	SRX17229398	SAMN30470387	PRJNA872820	15_STI-035
GSM6505569	GSE211922	SRX17229406	SAMN30470386	PRJNA872820	16_STI-006
GSM6505570	GSE211922	SRX17229407	SAMN30470385	PRJNA872820	17_STI-007
GSM6505571	GSE211922	SRX17229408	SAMN30470384	PRJNA872820	18_STI-012
GSM6505572	GSE211922	SRX17229415	SAMN30470383	PRJNA872820	19_STI-011
GSM6505573	GSE211922	SRX17229416	SAMN30470382	PRJNA872820	20_STI-017
GSM6505574	GSE211922	SRX17229409	SAMN30470381	PRJNA872820	21_ARM-006
GSM6505575	GSE211922	SRX17229410	SAMN30470380	PRJNA872820	22_ARM-007
GSM6505576	GSE211922	SRX17229411	SAMN30470379	PRJNA872820	23_ARM-019

Total number of rows: 57

Table truncated, full table size 3 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE270349_p20025_BothBatches_DESeq2_RawCount.csv.gz	6.1 Mb	(ftp)(http)	CSV
GSE270349_sample_descriptions.xlsx	28.9 Kb	(ftp)(http)	XLSX
SRA Run Selector
Raw data are available in SRA

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