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Series GSE268977 Query DataSets for GSE268977
Status Public on Jun 10, 2024
Title The cyclic-AMP binding domain of the efflux pump Rv3728 acts as a regulator of phosphatidyl-myo-inositol mannosides composition in Mycobacterium tuberculosis
Organism Mycobacterium tuberculosis H37Rv
Experiment type Genome variation profiling by high throughput sequencing
Summary Tuberculosis (TB) is an ancient disease caused by the intracellular bacterial pathogen Mycobacterium tuberculosis (Mtb). The rise of antimicrobial resistance (AMR) threatens to bring Mtb to the forefront of bacterial pathogens as the current treatments are increasingly becoming ineffective. Understanding the development of AMR and the virulence processes of Mtb is crucial for the identification of new drug targets and the rational design of anti-TB treatments. One of the established mechanisms of resistance is through the function of efflux proteins, which are transmembrane transporters that bind and remove antibiotic molecules out from the cell. Here, we determine the role of Rv3728, a major facilitator superfamily (MFS) efflux pump protein, which also predicted to bind 3',5'-cyclic adenosine monophosphate (cAMP). Using bioinformatic tools and cAMP binding assay, we confirm that Rv3728 binds to cAMP and identified E597 and R606 as important residues involved in binding. Although Rv3728 deletion has no impact on bacterial resistance and tolerance to different antibiotics, it affects membrane permeability and alters the acylation profile of phosphatidyl-myo-inositol mannosides lipids.
 
Overall design Mycobacterium tuberculosis H37Rv KO and WT.
 
Contributor(s) Larrouy-Maumus G, Tounta V, Chakraborty M, Liu Y, Fernandes N, Williams R, Meier T, Vaubourgeix J, Botella H, Visweswariah SS
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Submission date Jun 03, 2024
Last update date Jun 10, 2024
Contact name Gerald J Larrouy-Maumus
Organization name Imperial College London
Street address South Kensington Campus
City London
ZIP/Postal code SW7 2AZ
Country United Kingdom
 
Platforms (1)
GPL34550 NextSeq 2000 (Mycobacterium tuberculosis H37Rv)
Samples (5)
GSM8303947 1-1-KO-Rv3728
GSM8303948 1-2-KO-Rv3728
GSM8303949 2-1-KO-Rv3728
Relations
BioProject PRJNA1119542

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE268977_snippy_galaxy_analysis.xlsx 68.1 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA

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