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| Status |
Public on Jun 25, 2024 |
| Title |
Transcription of HIV-1 at sites of intact latent provirus integration |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://doi.org/10.1084/jem.20240391
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| Citation(s) |
39141127 |
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| Submission date |
May 21, 2024 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Gabriela S Silva Santos |
| E-mail(s) |
gsilva@rockefeller.edu
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| Organization name |
The Rockefeller University
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| Lab |
Laboratory of Molecular Immunology
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| Street address |
1230 York Avenue
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
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| Platforms (2) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (77)
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| GSM8283320 |
Tcell, control, resting, rep1 |
| GSM8283321 |
Tcell, control, resting, rep2 |
| GSM8283322 |
Tcell, control, resting, rep3 |
| GSM8283323 |
Tcell, control, resting, rep4 |
| GSM8283324 |
Jurkat, control, rep1 |
| GSM8283325 |
Jurkat, control, rep2 |
| GSM8283326 |
Jurkat, control, rep3 |
| GSM8283327 |
Tcell, ATP2B, activated, rep1 |
| GSM8283328 |
Tcell, ATP2B, activated, rep2 |
| GSM8283329 |
Tcell, ATP2B, activated, rep3 |
| GSM8283330 |
Tcell, ATP2B, resting, rep1 |
| GSM8283331 |
Tcell, ATP2B, resting, rep2 |
| GSM8283332 |
Tcell, ATP2B, resting, rep3 |
| GSM8283333 |
Jurkat, ATP2B, rep1 |
| GSM8283334 |
Jurkat, ATP2B, rep2 |
| GSM8283335 |
Jurkat, ATP2B, rep3 |
| GSM8283336 |
Tcell, chr13, activated, rep1 |
| GSM8283337 |
Tcell, chr13, activated, rep2 |
| GSM8283338 |
Tcell, chr13, activated, rep3 |
| GSM8283339 |
Tcell, chr13, resting, rep1 |
| GSM8283340 |
Tcell, chr13, resting, rep2 |
| GSM8283341 |
Tcell, chr13, resting, rep3 |
| GSM8283342 |
Jurkat, chr13, rep1 |
| GSM8283343 |
Jurkat, chr13, rep2 |
| GSM8283344 |
Jurkat, chr13, rep3 |
| GSM8283345 |
Tcell, KCNA3, activated, rep1 |
| GSM8283346 |
Tcell, KCNA3, activated, rep2 |
| GSM8283347 |
Tcell, KCNA3, activated, rep3 |
| GSM8283348 |
Tcell, KCNA3, resting, rep1 |
| GSM8283349 |
Tcell, KCNA3, resting, rep2 |
| GSM8283350 |
Tcell, KCNA3, resting, rep3 |
| GSM8283351 |
Jurkat, KCNA3, rep1 |
| GSM8283352 |
Jurkat, KCNA3, rep2 |
| GSM8283353 |
Jurkat, KCNA3, rep3 |
| GSM8283354 |
Tcell, KDM2A, activated, rep1 |
| GSM8283355 |
Tcell, KDM2A, activated, rep2 |
| GSM8283356 |
Tcell, KDM2A, activated, rep3 |
| GSM8283357 |
Tcell, KDM2A, resting, rep1 |
| GSM8283358 |
Tcell, KDM2A, resting, rep2 |
| GSM8283359 |
Tcell, KDM2A, resting, rep3 |
| GSM8283360 |
Jurkat, KDM2A, rep1 |
| GSM8283361 |
Jurkat, KDM2A, rep2 |
| GSM8283362 |
Jurkat, KDM2A, rep3 |
| GSM8283363 |
Tcell, ZNF140, activated, rep1 |
| GSM8283364 |
Tcell, ZNF140, activated, rep2 |
| GSM8283365 |
Tcell, ZNF140, activated, rep3 |
| GSM8283366 |
Tcell, ZNF140, resting, rep1 |
| GSM8283367 |
Tcell, ZNF140, resting, rep2 |
| GSM8283368 |
Tcell, ZNF140, resting, rep3 |
| GSM8283369 |
Jurkat, ZNF140, rep1 |
| GSM8283370 |
Jurkat, ZNF140, rep2 |
| GSM8283371 |
Jurkat, ZNF140, rep3 |
| GSM8283372 |
Tcell, ZNF460, activated, rep1 |
| GSM8283373 |
Tcell, ZNF460, activated, rep2 |
| GSM8283374 |
Tcell, ZNF460, activated, rep3 |
| GSM8283375 |
Tcell, ZNF460, resting, rep1 |
| GSM8283376 |
Tcell, ZNF460, resting, rep2 |
| GSM8283377 |
Tcell, ZNF460, resting, rep3 |
| GSM8283378 |
Jurkat, ZNF460, rep1 |
| GSM8283379 |
Jurkat, ZNF460, rep2 |
| GSM8283380 |
Jurkat, ZNF460, rep3 |
| GSM8283381 |
Jurkat, ZNF407, rep1 |
| GSM8283382 |
Jurkat, ZNF407, rep2 |
| GSM8283383 |
Jurkat, ZNF407, rep3 |
| GSM8283384 |
Participant 5104 10x RNA Replicate1 - Activated |
| GSM8283385 |
Participant 5104 10x VDJ Replicate1 - Activated |
| GSM8283386 |
Participant 5104 10x RNA Replicate1 - Resting |
| GSM8283387 |
Participant 5104 10x VDJ Replicate1 - Resting |
| GSM8283388 |
Participant 603 10x RNA Replicate1 - Activated |
| GSM8283389 |
Participant 603 10x VDJ Replicate1 - Activated |
| GSM8283390 |
Participant 603 10x RNA Replicate1 - Resting |
| GSM8283391 |
Participant 603 10x VDJ Replicate1 - Resting |
| GSM8283392 |
Participant 603 10x RNA Replicate2 - Resting |
| GSM8283393 |
Participant 603 10x VDJ Replicate2 - Resting |
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| This SuperSeries is composed of the following SubSeries: |
| GSE267987 |
Transcription of HIV-1 at sites of intact latent provirus integration [ATAC-seq] |
| GSE267988 |
Transcription of HIV-1 at sites of intact latent provirus integration [scRNA-seq] |
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| Relations |
| BioProject |
PRJNA1114035 |
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