NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE263619 Query DataSets for GSE263619
Status Public on Aug 07, 2024
Title Hydrogel biomaterials that stiffen and soften on demand reveal that skeletal muscle stem cells harbor a mechanical memory
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Muscle stem cells (MuSCs) are specialized cells that reside in adult skeletal muscle poised to repair muscle tissue. The ability of MuSCs to regenerate damaged tissues declines markedly with aging and in diseases such as Duchenne muscular dystrophy, but the underlying causes of MuSC dysfunction remain poorly understood. Both aging and disease result in dramatic increases in the stiffness of the muscle tissue microenvironment from fibrosis. MuSCs are known to lose their regenerative potential if cultured on stiff plastic substrates. We sought to determine if muscle stem cells harbor a memory of their past microenvironment and if it can be overcome. We tested MuSCs in situ using dynamic hydrogel biomaterials that soften or stiffen on demand in response to light and found that freshly isolated MuSCs develop a persistent memory of substrate stiffness characterized by loss of proliferative progenitors within the first three days of culture on stiff substrates. MuSCs cultured on soft hydrogels had altered cytoskeletal organization and activity of Rho and Rac GTPase and YAP mechanotransduction pathways compared to those on stiff hydrogels. Pharmacologic inhibition identified RhoA activation as responsible for the mechanical memory phenotype, and single cell RNA sequencing revealed a molecular signature of the mechanical memory. These studies highlight that microenvironmental stiffness regulates MuSC fate and leads to MuSC dysfunction that is not readily reversed by changing stiffness. Our results suggest that stiffness can be circumvented by targeting downstream signaling pathways to overcome stem cell dysfunction in aged and disease states with aberrant fibrotic tissue mechanics.
 
Overall design Primary skeletal muscle stem cells were isolated from the hindlimbs of young (2 mo) or aged (>24 mo) C57BL/6 mice and were subsequently cultured on poly(ethylene glycol) hydrogels with either 12 kPa or 40 kPa stiffness for 1, 3, or 7 days. A subset of cells were treated with rhosin, a RhoA inhibitor, for three days prior to collection. Cells were enzymatically detached from the hydrogels and processed for single cell sequencing according to the Parse Biosciences Evercode WT version 1 protocol.
 
Contributor(s) Madl CM, Blau HM
Citation missing Has this study been published? Please login to update or notify GEO.
NIH grant(s)
Grant ID Grant title Affiliation Name
K99 AG071738 Elucidating Effects of Fibrosis on Aged Stem Cells with Dynamic Biomaterials STANFORD UNIVERSITY Christopher Matthew Madl
R00 AG071738 Elucidating Effects of Fibrosis on Aged Stem Cells with Dynamic Biomaterials UNIVERSITY OF PENNSYLVANIA Christopher Matthew Madl
Submission date Apr 10, 2024
Last update date Aug 07, 2024
Contact name Christopher M Madl
E-mail(s) cmadl@seas.upenn.edu
Organization name University of Pennsylvania
Department Materials Science and Engineering
Street address 3231 Walnut St
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM8195514 Day 3, Rho inhib, sublibrary 1
GSM8195515 Day 3, Rho inhib, sublibrary 2
GSM8195516 Timecourse, sublibrary 1
Relations
BioProject PRJNA1098586

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE263619_combined_analysis.h5ad 5.5 Gb (ftp)(http) H5AD
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap