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Series GSE26302 Query DataSets for GSE26302
Status Public on Sep 09, 2011
Title Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Chromosomal aberrations were studied both in a lung cancer cell line and colorectal cancer tumor samples. Results were verified by SKY karyotypes and by DNA ploidy analysis. The sensitivity of detecting chromosomal aberrations in tumor samples was evaluated by analyzing data from simulated mixtures of the lung cancer cell line H1395 and the normal cell line 1395BL from the same patient.
Overall design Copy number analysis is presented on 12 colorectal cancer tumor samples and on in silico dilutions of a lung cancer cell line and its patient-matched blood cell line.
Contributor(s) Rasmussen M, Sundström M, Kultima HG, Botling J, Micke P, Birgirsson H, Glimelius B, Isaksson A
Citation(s) 22023820
Submission date Dec 23, 2010
Last update date Nov 27, 2018
Contact name Anders Isaksson
Organization name Uppsala University
Street address Akademiska sjukhuset ing61 3tr
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (14)
GSM645844 Colorectal_Tumor_Sample_132
GSM645845 Colorectal_Tumor_Sample_16080
GSM645846 Colorectal_Tumor_Sample_16266
BioProject PRJNA135123

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26302_RAW.tar 417.8 Mb (http)(custom) TAR (of CEL, TXT)
GSE26302_log_ratios_matrix.txt.gz 220.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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